The cpPredictor server generates secondary structure for RNA query sequence(s) using structural template(s). Templates are RNA secondary structures, either experimentally identified or predicted. FASTA format for sequences and dot-bracket format for the template structures are accepted on input. Biological reliability of the generated structures is evaluated in form of z-scores.

Information on how the prediction algorithm works can be found here. You can also try our example.

Citations:

• Jelínek, J., Pánek, J., cpPredictor: a web server for template-based prediction of RNA secondary structure, Bioinformatics, Volume 35, Issue 7, 01 April 2019, Pages 1231-1233, doi:10.1093/bioinformatics/bty753.
• Pánek, J., Modrák, M. and Schwarz, M. (2017) An Algorithm for Template-Based Prediction of Secondary Structures of Individual RNA Sequences, Front Genet, 8, 147, doi:10.3389/fgene.2017.00147.